NICSNP LD
Scott Saccone
3/23/06

FILES: ld.txt (tab delimited)
       ld.sas7bdat

LD coefficients r^2 and |D'| have been estimated for all autosomal
markers selected for candidate genes that are within 1 Mb of each
other. I used the program Haploview
(http://www.broad.mit.edu/mpg/haploview) to estimate these
coefficients.  This was done in cases, controls, and the combined
sample. I also computed the minimum r^2 (min_rsq) from cases and
controls. The marker IDs are the internal Perlegen IDs (ID 12345
corresponds to marker afd12345).  There should a be dataset on the web
site that include the rs IDs for every Perlegen ID. The positions are
the Perlegen physical positions which are based on human reference
build 35.1.