NICSNP LD Scott Saccone 3/23/06 FILES: ld.txt (tab delimited) ld.sas7bdat LD coefficients r^2 and |D'| have been estimated for all autosomal markers selected for candidate genes that are within 1 Mb of each other. I used the program Haploview (http://www.broad.mit.edu/mpg/haploview) to estimate these coefficients. This was done in cases, controls, and the combined sample. I also computed the minimum r^2 (min_rsq) from cases and controls. The marker IDs are the internal Perlegen IDs (ID 12345 corresponds to marker afd12345). There should a be dataset on the web site that include the rs IDs for every Perlegen ID. The positions are the Perlegen physical positions which are based on human reference build 35.1.